Molecular characterization and genetic diversity studie of soybean (glycine max l.) Cultivars using rapd markers

Martin Vivodik, Zelmira Balazova, Milan Chnapek, Zuzana Hromadova, Lucia Mikolasova, Zdenka Galova

Molecular characterization and genetic diversity studie of soybean (glycine max l.) Cultivars using rapd markers

Číslo: Special Issue/2022/2023
Periodikum: Journal of Microbiology, Biotechnology and Food Sciences
DOI: 10.55251/jmbfs.9219

Klíčová slova: soybean, RAPD, dendrogram, polymorphism, UPGMA

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Anotace: Soybean (Glycine max L.) is an important crop plant which contains a high amount of oil and protein. The main goal of the work was to use 13 RAPD (Random Amplified Polymorphic DNA) markers to study genetic polymorphism in a set of 28 soybean genotypes and to construct a dendrogram from the obtained results, based on which we will recommend genotypes for further breeding. In total, using 13 RAPD markers, we determined 108 fragments in a set of 28 soybean genotypes with an average number of 8.31 fragments per genotype. The number of fragments varied from 6 (OPB-08, OPE-07) to 12 (SIGMA-D-01). Of the total number of 108 fragments, 70 were polymorphic with an average number of 5.38 polymorphic fragments per genotype. The number of polymorphic fragments varied from 3 (OPE-07, OPF-14) to 9 (SIGMA-D-01). The average percentage of fragment polymorphism was 63.68% and ranged from 42.86% (OPF-14) to 83.33% (OPB-08). Diversity index (DI) values ranged from 0.710 (OPA-03) to 0.846 (OPD-08) with an average value of 0.763. A dendrogram prepared based on hierarchical cluster analysis using UPGMA algorithm separated 28 soybean genotypes into four clusters. The applied RAPD markers proved to be a suitable tool for detection of the genetic diversity of soybean genotypes. Based on the constructed dendrogram, it is possible to select suitable varieties for marker-assisted breeding.